Neural ordinary differential equations (neural ODEs) can effectively learn dynamical systems from time series data, but their behavior on graph-structured data remains poorly understood, especially when applied to graphs with different size or structure than encountered during training. We study neural ODEs ($\mathtt{nODE}$s) with vector fields following the Barabási-Barzel form, trained on synthetic data from five common dynamical systems on graphs. Using the $\mathbb{S}^1$-model to generate graphs with realistic and tunable structure, we find that degree heterogeneity and the type of dynamical system are the primary factors in determining $\mathtt{nODE}$s' ability to generalize across graph sizes and properties. This extends to $\mathtt{nODE}$s' ability to capture fixed points and maintain performance amid missing data. Average clustering plays a secondary role in determining $\mathtt{nODE}$ performance. Our findings highlight $\mathtt{nODE}$s as a powerful approach to understanding complex systems but underscore challenges emerging from degree heterogeneity and clustering in realistic graphs.
Graph neural networks (GNNs) have demonstrated remarkable performance in various graph-based machine learning tasks by effectively modeling high-order interactions between nodes. However, training GNNs without protection may leak sensitive personal information in graph data, including links and node features. Local differential privacy (LDP) is an advanced technique for protecting data privacy in decentralized networks. Unfortunately, existing local differentially private GNNs either only preserve link privacy or suffer significant utility loss in the process of preserving link and node feature privacy. In this paper, we propose an effective LDP framework, called HoGS, which trains GNNs with link and feature protection by generating a synthetic graph. Concretely, HoGS first collects the link and feature information of the graph under LDP, and then utilizes the phenomenon of homophily in graph data to reconstruct the graph structure and node features separately, thereby effectively mitigating the negative impact of LDP on the downstream GNN training. We theoretically analyze the privacy guarantee of HoGS and conduct experiments using the generated synthetic graph as input to various state-of-the-art GNN architectures. Experimental results on three real-world datasets show that HoGS significantly outperforms baseline methods in the accuracy of training GNNs.
Hybrid Retrieval-Augmented Generation (RAG) pipelines combine vector similarity search with knowledge graph expansion for multi-hop reasoning. We show that this composition introduces a distinct security failure mode: a vector-retrieved "seed" chunk can pivot via entity links into sensitive graph neighborhoods, causing cross-tenant data leakage that does not occur in vector-only retrieval. We formalize this risk as Retrieval Pivot Risk (RPR) and introduce companion metrics Leakage@k, Amplification Factor, and Pivot Depth (PD) to quantify leakage magnitude and traversal structure. We present seven Retrieval Pivot Attacks that exploit the vector-to-graph boundary and show that adversarial injection is not required: naturally shared entities create cross-tenant pivot paths organically. Across a synthetic multi-tenant enterprise corpus and the Enron email corpus, the undefended hybrid pipeline exhibits high pivot risk (RPR up to 0.95) with multiple unauthorized items returned per query. Leakage consistently appears at PD=2, which we attribute to the bipartite chunk-entity topology and formalize as a proposition. We then show that enforcing authorization at a single location, the graph expansion boundary, eliminates measured leakage (RPR near 0) across both corpora, all attack variants, and label forgery rates up to 10 percent, with minimal overhead. Our results indicate the root cause is boundary enforcement, not inherently complex defenses: two individually secure retrieval components can compose into an insecure system unless authorization is re-checked at the transition point.
Link prediction is a fundamental task in graph machine learning with widespread applications such as recommendation systems, drug discovery, knowledge graphs, etc. In the foundation model era, how to develop universal link prediction methods across datasets and domains becomes a key problem, with some initial attempts adopting Graph Foundation Models utilizing Graph Neural Networks and Large Language Models. However, the existing methods face notable limitations, including limited pre-training scale or heavy reliance on textual information. Motivated by the success of tabular foundation models (TFMs) in achieving universal prediction across diverse tabular datasets, we explore an alternative approach by TFMs, which are pre-trained on diverse synthetic datasets sampled from structural causal models and support strong in-context learning independent of textual attributes. Nevertheless, adapting TFMs for link prediction faces severe technical challenges such as how to obtain the necessary context and capture link-centric topological information. To solve these challenges, we propose TFMLinker (Tabular Foundation Model for Link Predictor), aiming to leverage the in-context learning capabilities of TFMs to perform link prediction across diverse graphs without requiring dataset-specific fine-tuning. Specifically, we first develop a prototype-augmented local-global context module to construct context that captures both graph-specific and cross-graph transferable patterns. Next, we design a universal topology-aware link encoder to capture link-centric topological information and generate link representations as inputs for the TFM. Finally, we employ the TFM to predict link existence through in-context learning. Experiments on 6 graph benchmarks across diverse domains demonstrate the superiority of our method over state-of-the-art baselines without requiring dataset-specific finetuning.
Vessel trajectory data from the Automatic Identification System (AIS) is used widely in maritime analytics. Yet, analysis is difficult for non-expert users due to the incompleteness and complexity of AIS data. We present CLEAR, a knowledge-centric vessel trajectory analysis platform that aims to overcome these barriers. By leveraging the reasoning and generative capabilities of Large Language Models (LLMs), CLEAR transforms raw AIS data into complete, interpretable, and easily explorable vessel trajectories through a Structured Data-derived Knowledge Graph (SD-KG). As part of the demo, participants can configure parameters to automatically download and process AIS data, observe how trajectories are completed and annotated, inspect both raw and imputed segments together with their SD-KG evidence, and interactively explore the SD-KG through a dedicated graph viewer, gaining an intuitive and transparent understanding of vessel movements.
Graph Neural Networks (GNNs) have achieved remarkable success across various graph-based tasks but remain highly sensitive to distribution shifts. In this work, we focus on a prevalent yet under-explored phenomenon in graph generalization, Minimal Shift Flip (MSF),where test samples that slightly deviate from the training distribution are abruptly misclassified. To interpret this phenomenon, we revisit MSF through the lens of Sharpness-Aware Minimization (SAM), which characterizes the local stability and sharpness of the loss landscape while providing a theoretical foundation for modeling generalization error. To quantify loss sharpness, we introduce the concept of Local Robust Radius, measuring the smallest perturbation required to flip a prediction and establishing a theoretical link between local stability and generalization. Building on this perspective, we further observe a continual decrease in the robust radius during training, indicating weakened local stability and an increasingly sharp loss landscape that gives rise to MSF. To jointly solve the MSF phenomenon and the intractability of radius, we develop an energy-based formulation that is theoretically proven to be monotonically correlated with the robust radius, offering a tractable and principled objective for modeling flatness and stability. Building on these insights, we propose an energy-driven generative augmentation framework (E2A) that leverages energy-guided latent perturbations to generate pseudo-OOD samples and enhance model generalization. Extensive experiments across multiple benchmarks demonstrate that E2A consistently improves graph OOD generalization, outperforming state-of-the-art baselines.
Owing to their unprecedented comprehension capabilities, large language models (LLMs) have become indispensable components of modern web search engines. From a technical perspective, this integration represents retrieval-augmented generation (RAG), which enhances LLMs by grounding them in external knowledge bases. A prevalent technical approach in this context is graph-based RAG (G-RAG). However, current G-RAG methodologies frequently underutilize graph topology, predominantly focusing on low-order structures or pre-computed static communities. This limitation affects their effectiveness in addressing dynamic and complex queries. Thus, we propose DA-RAG, which leverages attributed community search (ACS) to extract relevant subgraphs based on the queried question dynamically. DA-RAG captures high-order graph structures, allowing for the retrieval of self-complementary knowledge. Furthermore, DA-RAG is equipped with a chunk-layer oriented graph index, which facilitates efficient multi-granularity retrieval while significantly reducing both computational and economic costs. We evaluate DA-RAG on multiple datasets, demonstrating that it outperforms existing RAG methods by up to 40% in head-to-head comparisons across four metrics while reducing index construction time and token overhead by up to 37% and 41%, respectively.
Temporal Knowledge Graph (TKG) reasoning seeks to predict future missing facts from historical evidence. While diffusion models (DM) have recently gained attention for their ability to capture complex predictive distributions, two gaps remain: (i) the generative path is conditioned only on positive evidence, overlooking informative negative context, and (ii) training objectives are dominated by cross-entropy ranking, which improves candidate ordering but provides little supervision over the calibration of the denoised embedding. To bridge this gap, we introduce Negative-Aware Diffusion model for TKG Extrapolation (NADEx). Specifically, NADEx encodes subject-centric histories of entities, relations and temporal intervals into sequential embeddings. NADEx perturbs the query object in the forward process and reconstructs it in reverse with a Transformer denoiser conditioned on the temporal-relational context. We further derive a cosine-alignment regularizer derived from batch-wise negative prototypes, which tightens the decision boundary against implausible candidates. Comprehensive experiments on four public TKG benchmarks demonstrate that NADEx delivers state-of-the-art performance.
Knowledge Graph (KG) generation requires models to learn complex semantic dependencies between triples while maintaining domain validity constraints. Unlike link prediction, which scores triples independently, generative models must capture interdependencies across entire subgraphs to produce semantically coherent structures. We present ARK (Auto-Regressive Knowledge Graph Generation), a family of autoregressive models that generate KGs by treating graphs as sequences of (head, relation, tail) triples. ARK learns implicit semantic constraints directly from data, including type consistency, temporal validity, and relational patterns, without explicit rule supervision. On the IntelliGraphs benchmark, our models achieve 89.2% to 100.0% semantic validity across diverse datasets while generating novel graphs not seen during training. We also introduce SAIL, a variational extension of ARK that enables controlled generation through learned latent representations, supporting both unconditional sampling and conditional completion from partial graphs. Our analysis reveals that model capacity (hidden dimensionality >= 64) is more critical than architectural depth for KG generation, with recurrent architectures achieving comparable validity to transformer-based alternatives while offering substantial computational efficiency. These results demonstrate that autoregressive models provide an effective framework for KG generation, with practical applications in knowledge base completion and query answering.
Diffusion language models (D-LLMs) offer parallel denoising and bidirectional context, but hallucination detection for D-LLMs remains underexplored. Prior detectors developed for auto-regressive LLMs typically rely on single-pass cues and do not directly transfer to diffusion generation, where factuality evidence is distributed across the denoising trajectory and may appear, drift, or be self-corrected over time. We introduce TDGNet, a temporal dynamic graph framework that formulates hallucination detection as learning over evolving token-level attention graphs. At each denoising step, we sparsify the attention graph and update per-token memories via message passing, then apply temporal attention to aggregate trajectory-wide evidence for final prediction. Experiments on LLaDA-8B and Dream-7B across QA benchmarks show consistent AUROC improvements over output-based, latent-based, and static-graph baselines, with single-pass inference and modest overhead. These results highlight the importance of temporal reasoning on attention graphs for robust hallucination detection in diffusion language models.